at java.base/java.util.concurrent.FutureTask.report(Unknown Source) at java.base/java.util.concurrent.FutureTask.get(Unknown Source) at edu.umich.andykong.msfragger ...

2025-07-24 19:10:08.209 [http-nio-8000-exec-37] ERROR com.jason.app.config.log.Log:110 - [NativeMethodAccessorImpl.invoke0() line: -2]GlobalExceptionHandler.exception ...

I'd say the problem is that you're even dealing with a 2Gb XML file to begin with. XML is designed mostly as a method to exchange data between programs. What it looks like you're doing here is using ...